| Individual | Species | Family | |
|---|---|---|---|
| Entire dataset | 855 | 51 | 16 |
| Back-calculated data by sp. and loc. | 669 | 44 | 16 |
| Back-calculated data by sp. | 710 | 45 | 16 |
| Species | n | Min length (TL, mm) | Max length (TL, mm) | Age max (years) |
|---|---|---|---|---|
| Abudefduf sexfasciatus | 13 | 61 | 172 | 13 |
| Acanthurus achilles | 16 | 138 | 246 | 27 |
| Acanthurus lineatus | 8 | 123 | 362 | 23 |
| Acanthurus nigricans | 8 | 150 | 210 | 9 |
| Acanthurus pyroferus | 6 | 195 | 230 | 19 |
| Acanthurus triostegus | 18 | 147 | 194 | 12 |
| Balistapus undulatus | 17 | 70 | 283 | 18 |
| Caranx melampygus | 7 | 368 | 712 | 15 |
| Centropyge bispinosa | 7 | 36 | 80 | 11 |
| Centropyge flavissima | 26 | 48 | 150 | 27 |
| Cephalopholis argus | 41 | 120 | 450 | 21 |
| Cephalopholis urodeta | 8 | 150 | 214 | 17 |
| Chaetodon citrinellus | 7 | 64 | 101 | 6 |
| Chaetodon ornatissimus | 10 | 122 | 175 | 10 |
| Chlorurus spilurus | 31 | 183 | 344 | 16 |
| Chromis iomelas | 15 | 41 | 61 | 5 |
| Chromis viridis | 6 | 115 | 148 | 9 |
| Ctenochaetus marginatus | 15 | 99 | 270 | 13 |
| Ctenochaetus striatus | 26 | 153 | 218 | 17 |
| Dascyllus aruanus | 20 | 51 | 71 | 7 |
| Dascyllus flavicaudus | 8 | 89 | 104 | 13 |
| Epibulus insidiator | 17 | 157 | 350 | 16 |
| Epinephelus fasciatus | 10 | 123 | 256 | 13 |
| Epinephelus hexagonatus | 14 | 160 | 268 | 14 |
| Epinephelus merra | 46 | 108 | 261 | 17 |
| Epinephelus polyphekadion | 14 | 252 | 514 | 20 |
| Gnathodentex aureolineatus | 8 | 197 | 255 | 17 |
| Gymnosarda unicolor | 4 | 499 | 985 | 7 |
| Halichoeres trimaculatus | 7 | 123 | 186 | 5 |
| Lutjanus fulvus | 12 | 195 | 289 | 21 |
| Lutjanus kasmira | 10 | 115 | 326 | 30 |
| Mulloidichthys flavolineatus | 14 | 257 | 311 | 6 |
| Myripristis berndti | 30 | 147 | 279 | 24 |
| Naso lituratus | 17 | 228 | 432 | 10 |
| Odonus niger | 17 | 176 | 350 | 16 |
| Ostorhinchus angustatus | 15 | 46 | 83 | 6 |
| Ostorhinchus apogonoides | 27 | 58 | 96 | 7 |
| Parupeneus barberinus | 6 | 228 | 496 | 6 |
| Plectropomus laevis | 30 | 399 | 957 | 22 |
| Pristiapogon taeniopterus | 28 | 53 | 104 | 8 |
| Sargocentron microstoma | 22 | 62 | 204 | 13 |
| Scarus psittacus | 7 | 195 | 311 | 6 |
| Siganus argenteus | 11 | 236 | 388 | 13 |
| Stegastes nigricans | 13 | 55 | 138 | 13 |
| Zebrasoma scopas | 18 | 110 | 166 | 24 |
| Species | Gambiers | Moorea | Manuae | Marquesas | Tuamotu | Hao |
|---|---|---|---|---|---|---|
| Abudefduf sexfasciatus | 11 | 2 | NA | NA | NA | NA |
| Acanthurus achilles | 6 | NA | 10 | NA | NA | NA |
| Acanthurus lineatus | NA | NA | NA | 8 | NA | NA |
| Acanthurus nigricans | NA | NA | NA | 8 | NA | NA |
| Acanthurus pyroferus | NA | NA | NA | 6 | NA | NA |
| Acanthurus triostegus | 3 | 11 | NA | 4 | NA | NA |
| Balistapus undulatus | NA | 12 | NA | 5 | NA | NA |
| Caranx melampygus | NA | 5 | NA | NA | 2 | NA |
| Centropyge bispinosa | NA | 7 | NA | NA | NA | NA |
| Centropyge flavissima | 9 | 5 | NA | 12 | NA | NA |
| Cephalopholis argus | 6 | 10 | NA | NA | 10 | 15 |
| Cephalopholis urodeta | 8 | NA | NA | NA | NA | NA |
| Chaetodon citrinellus | NA | 7 | NA | NA | NA | NA |
| Chaetodon ornatissimus | 4 | NA | NA | 6 | NA | NA |
| Chlorurus spilurus | 13 | 16 | NA | NA | 2 | NA |
| Chromis iomelas | NA | 15 | NA | NA | NA | NA |
| Chromis viridis | 6 | NA | NA | NA | NA | NA |
| Ctenochaetus marginatus | NA | NA | NA | 15 | NA | NA |
| Ctenochaetus striatus | 11 | 15 | NA | NA | NA | NA |
| Dascyllus aruanus | NA | 20 | NA | NA | NA | NA |
| Dascyllus flavicaudus | 8 | NA | NA | NA | NA | NA |
| Epibulus insidiator | 12 | 5 | NA | NA | NA | NA |
| Epinephelus fasciatus | NA | NA | NA | 10 | NA | NA |
| Epinephelus hexagonatus | NA | NA | NA | NA | NA | 14 |
| Epinephelus merra | 13 | 20 | NA | NA | NA | 13 |
| Epinephelus polyphekadion | NA | NA | NA | NA | NA | 14 |
| Gnathodentex aureolineatus | 8 | NA | NA | NA | NA | NA |
| Gymnosarda unicolor | 4 | NA | NA | NA | NA | NA |
| Halichoeres trimaculatus | 6 | 1 | NA | NA | NA | NA |
| Lutjanus fulvus | NA | 6 | NA | NA | 6 | NA |
| Lutjanus kasmira | 2 | NA | NA | 8 | NA | NA |
| Mulloidichthys flavolineatus | NA | 14 | NA | NA | NA | NA |
| Myripristis berndti | 7 | 15 | NA | 8 | NA | NA |
| Naso lituratus | 11 | 6 | NA | NA | NA | NA |
| Odonus niger | NA | 13 | NA | 4 | NA | NA |
| Ostorhinchus angustatus | NA | 15 | NA | NA | NA | NA |
| Ostorhinchus apogonoides | NA | NA | NA | 27 | NA | NA |
| Parupeneus barberinus | 5 | NA | NA | 1 | NA | NA |
| Plectropomus laevis | 12 | NA | NA | NA | NA | 18 |
| Pristiapogon taeniopterus | NA | NA | NA | 28 | NA | NA |
| Sargocentron microstoma | NA | 17 | NA | 5 | NA | NA |
| Scarus psittacus | NA | 2 | NA | NA | 5 | NA |
| Siganus argenteus | 6 | 2 | NA | NA | 3 | NA |
| Stegastes nigricans | 3 | 10 | NA | NA | NA | NA |
| Zebrasoma scopas | 5 | 13 | NA | NA | NA | NA |
| Number of rows with NA | |
|---|---|
| Family | 0 |
| Genus | 0 |
| Species | 0 |
| ID | 0 |
| Agei | 0 |
| Ri | 387 |
| Agecpt | 0 |
| Rcpt | 0 |
| Lcpt | 0 |
| L0p | 0 |
| R0p | 2811 |
| Li_sp_m | 410 |
| Li_sp_sd | 410 |
| Li_sploc_m | 757 |
| Li_sploc_sd | 757 |
| Weight | 603 |
| Location | 0 |
| Observer | 0 |
Figure 1. Relation between length (TL, mm) and age, by species.
Figure 2. Relation between length (TL, mm) and age, by species and location.
| Species | Linf | K | t0 |
|---|---|---|---|
| Abudefduf sexfasciatus | 14.851 (0.394) | 1.101 (0.106) | -0.026 (0.024) |
| Acanthurus achilles | 18.499 (0.81) | 1.185 (0.149) | -0.023 (0.024) |
| Acanthurus lineatus | 24.677 (2.411) | 1.044 (0.244) | -0.029 (0.037) |
| Acanthurus nigricans | 17.114 (0.988) | 1.485 (0.229) | -0.011 (0.016) |
| Acanthurus pyroferus | 19.594 (1.028) | 0.783 (0.137) | -0.072 (0.069) |
| Acanthurus triostegus | 15.717 (0.339) | 0.796 (0.06) | -0.051 (0.028) |
| Balistapus undulatus | 18.987 (1.902) | 0.338 (0.059) | -0.282 (0.095) |
| Caranx melampygus | 54.386 (4.05) | 0.246 (0.039) | -0.192 (0.083) |
| Centropyge bispinosa | 5.24 (0.897) | 1.099 (4.24) | -0.067 (0.036) |
| Centropyge flavissima | 10.036 (0.654) | 0.4 (0.067) | -0.222 (0.081) |
| Cephalopholis argus | 29.978 (1.244) | 0.397 (0.021) | -0.251 (0.042) |
| Cephalopholis urodeta | 19.922 (1.553) | 0.153 (0.024) | -0.569 (0.113) |
| Chaetodon ornatissimus | 14.554 (0.681) | 1 (0.141) | -0.025 (0.036) |
| Chlorurus spilurus | 23.283 (0.983) | 1.172 (0.126) | -0.017 (0.019) |
| Chromis iomelas | 5.002 (0.364) | 1.292 (0.247) | -0.053 (0.021) |
| Chromis viridis | 12.002 (1.096) | 0.942 (0.241) | -0.05 (0.052) |
| Ctenochaetus marginatus | 20.925 (1.501) | 0.424 (0.042) | -0.134 (0.044) |
| Ctenochaetus striatus | 17.145 (0.402) | 0.849 (0.053) | -0.045 (0.022) |
| Dascyllus aruanus | 5.596 (0.2) | 0.963 (0.1) | -0.05 (0.025) |
| Dascyllus flavicaudus | 8.977 (0.42) | 0.499 (0.055) | -0.153 (0.059) |
| Epibulus insidiator | 22.532 (1.218) | 0.565 (0.061) | -0.113 (0.041) |
| Epinephelus fasciatus | 20.424 (1.613) | 0.715 (0.109) | -0.038 (0.03) |
| Epinephelus hexagonatus | 21.301 (0.928) | 0.637 (0.068) | -0.067 (0.042) |
| Epinephelus merra | 17.755 (0.759) | 0.854 (0.057) | -0.045 (0.019) |
| Epinephelus polyphekadion | 38.922 (2.445) | 0.281 (0.034) | -0.236 (0.074) |
| Gnathodentex aureolineatus | 20.184 (0.928) | 0.549 (0.079) | -0.154 (0.077) |
| Halichoeres trimaculatus | 17.999 (1.763) | 0.645 (0.145) | -0.036 (0.058) |
| Lutjanus fulvus | 23.88 (0.928) | 0.674 (0.082) | -0.086 (0.049) |
| Mulloidichthys flavolineatus | 25.756 (0.53) | 1.601 (0.109) | -0.008 (0.009) |
| Myripristis berndti | 20.121 (0.761) | 0.419 (0.033) | -0.235 (0.052) |
| Naso lituratus | 31.222 (1.786) | 1.815 (0.237) | -0.004 (0.009) |
| Odonus niger | 25.063 (1.219) | 0.46 (0.053) | -0.141 (0.05) |
| Ostorhinchus angustatus | 7.229 (0.348) | 0.681 (0.085) | -0.111 (0.036) |
| Ostorhinchus apogonoides | 8.243 (0.223) | 0.836 (0.053) | -0.072 (0.014) |
| Plectropomus laevis | 71.926 (3.013) | 0.317 (0.029) | -0.194 (0.056) |
| Pristiapogon taeniopterus | 8.013 (0.272) | 0.78 (0.068) | -0.093 (0.027) |
| Sargocentron microstoma | 15.714 (0.815) | 0.701 (0.077) | -0.049 (0.025) |
| Siganus argenteus | 29.483 (2.597) | 0.728 (0.143) | -0.036 (0.044) |
| Stegastes nigricans | 11.721 (0.543) | 0.452 (0.057) | -0.16 (0.077) |
| Zebrasoma scopas | 13.319 (0.283) | 1.154 (0.089) | -0.022 (0.018) |
| Species | Location | Linf | K | t0 |
|---|---|---|---|---|
| Abudefduf sexfasciatus | Gambiers | 14.837 (0.393) | 1.103 (0.104) | -0.027 (0.024) |
| Acanthurus achilles | Manuae | 19.44 (0.642) | 1.203 (0.14) | -0.021 (0.025) |
| Acanthurus lineatus | Marquesas | 24.726 (2.413) | 1.044 (0.255) | -0.029 (0.039) |
| Acanthurus nigricans | Marquesas | 17.06 (1.02) | 1.495 (0.226) | -0.011 (0.015) |
| Acanthurus pyroferus | Marquesas | 19.561 (1.02) | 0.788 (0.142) | -0.07 (0.068) |
| Acanthurus triostegus | Moorea | 15.673 (0.476) | 0.742 (0.073) | -0.067 (0.038) |
| Balistapus undulatus | Marquesas | 19.329 (2.174) | 0.413 (0.151) | -0.254 (0.173) |
| Balistapus undulatus | Moorea | 17.235 (1.905) | 0.376 (0.066) | -0.237 (0.096) |
| Caranx melampygus | Moorea | 54.835 (4.393) | 0.242 (0.042) | -0.167 (0.102) |
| Centropyge bispinosa | Moorea | 5.253 (0.849) | 0.926 (0.565) | -0.066 (0.036) |
| Centropyge flavissima | Marquesas | 6.773 (0.573) | 1.076 (0.209) | -0.033 (0.021) |
| Centropyge flavissima | Moorea | 8.175 (0.757) | 1.262 (0.329) | -0.028 (0.026) |
| Centropyge flavissima | Gambiers | 12.21 (1.244) | 0.204 (0.041) | -0.834 (0.252) |
| Cephalopholis argus | Moorea | 22.852 (2.469) | 0.728 (0.149) | -0.068 (0.052) |
| Cephalopholis argus | Tuamotu | 27.447 (1.451) | 0.439 (0.064) | -0.225 (0.099) |
| Cephalopholis argus | Gambiers | 40.416 (1.071) | 0.297 (0.031) | -0.45 (0.14) |
| Cephalopholis argus | Hao | 32.317 (1.775) | 0.401 (0.035) | -0.184 (0.058) |
| Cephalopholis urodeta | Gambiers | 20.981 (1.278) | 0.141 (0.021) | -0.604 (0.102) |
| Chaetodon ornatissimus | Marquesas | 14.599 (1.148) | 1.077 (0.261) | -0.022 (0.043) |
| Chlorurus spilurus | Moorea | 22.998 (1.313) | 1.245 (0.214) | -0.016 (0.03) |
| Chlorurus spilurus | Gambiers | 22.585 (1.059) | 0.925 (0.12) | -0.037 (0.032) |
| Chromis iomelas | Moorea | 4.994 (0.355) | 1.301 (0.247) | -0.052 (0.021) |
| Chromis viridis | Gambiers | 11.953 (1.072) | 0.951 (0.228) | -0.048 (0.051) |
| Ctenochaetus marginatus | Marquesas | 20.934 (1.533) | 0.424 (0.043) | -0.135 (0.046) |
| Ctenochaetus striatus | Moorea | 17.326 (0.566) | 1.142 (0.098) | -0.021 (0.016) |
| Ctenochaetus striatus | Gambiers | 16.99 (0.543) | 0.566 (0.051) | -0.112 (0.049) |
| Dascyllus aruanus | Moorea | 5.589 (0.201) | 0.964 (0.101) | -0.05 (0.025) |
| Dascyllus flavicaudus | Gambiers | 8.992 (0.403) | 0.498 (0.054) | -0.152 (0.059) |
| Epibulus insidiator | Gambiers | 23.859 (1.327) | 0.539 (0.066) | -0.123 (0.052) |
| Epinephelus fasciatus | Marquesas | 20.354 (1.664) | 0.721 (0.117) | -0.038 (0.03) |
| Epinephelus hexagonatus | Hao | 21.337 (0.907) | 0.636 (0.068) | -0.067 (0.043) |
| Epinephelus merra | Moorea | 14.078 (0.864) | 1.192 (0.098) | -0.016 (0.014) |
| Epinephelus merra | Gambiers | 18.52 (0.887) | 0.655 (0.08) | -0.093 (0.052) |
| Epinephelus merra | Hao | 22.481 (0.617) | 0.842 (0.084) | -0.043 (0.034) |
| Epinephelus polyphekadion | Hao | 38.812 (2.245) | 0.248 (0.024) | -0.332 (0.083) |
| Gnathodentex aureolineatus | Gambiers | 20.151 (0.881) | 0.547 (0.076) | -0.155 (0.079) |
| Halichoeres trimaculatus | Gambiers | 17.844 (1.584) | 0.655 (0.157) | -0.036 (0.058) |
| Lutjanus fulvus | Moorea | 21.82 (1.598) | 1.175 (0.244) | -0.019 (0.025) |
| Lutjanus fulvus | Tuamotu | 24.765 (1.386) | 0.476 (0.076) | -0.215 (0.11) |
| Mulloidichthys flavolineatus | Moorea | 25.762 (0.535) | 1.601 (0.108) | -0.008 (0.009) |
| Myripristis berndti | Gambiers | 23.324 (1.519) | 0.338 (0.058) | -0.391 (0.157) |
| Myripristis berndti | Marquesas | 21.795 (0.496) | 0.378 (0.036) | -0.298 (0.101) |
| Myripristis berndti | Moorea | 17.458 (0.9) | 0.553 (0.064) | -0.11 (0.044) |
| Naso lituratus | Gambiers | 31.83 (1.758) | 1.718 (0.227) | -0.005 (0.011) |
| Odonus niger | Moorea | 22.957 (1.147) | 0.588 (0.071) | -0.08 (0.041) |
| Ostorhinchus angustatus | Moorea | 7.216 (0.356) | 0.686 (0.089) | -0.11 (0.036) |
| Ostorhinchus apogonoides | Marquesas | 8.226 (0.217) | 0.839 (0.053) | -0.073 (0.014) |
| Plectropomus laevis | Gambiers | 77.388 (3.133) | 0.253 (0.023) | -0.408 (0.097) |
| Plectropomus laevis | Hao | 52.309 (2.535) | 0.682 (0.054) | -0.012 (0.019) |
| Pristiapogon taeniopterus | Marquesas | 8.025 (0.275) | 0.778 (0.069) | -0.093 (0.027) |
| Sargocentron microstoma | Moorea | 16.263 (0.542) | 0.656 (0.052) | -0.056 (0.027) |
| Siganus argenteus | Gambiers | 26.724 (2.244) | 0.53 (0.098) | -0.091 (0.067) |
| Stegastes nigricans | Moorea | 12.006 (0.886) | 0.409 (0.099) | -0.199 (0.11) |
Figure 3. Growth curves on back-calculated data by species.
Figure 4. Growth curves on back-calculated data by species and location.
Figure 5. Comparison of growth curves by species and location (one location only by growth curve) between back-calculated data and raw data (age estimated and length at capture).
Figure 6. Comparison of growth curves based on VBGF growth parameters estimated through Bayesian framework on species back-calculated data with growth curves from literature (interactive plot).
## R version 4.0.1 (2020-06-06)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 18363)
##
## Matrix products: default
##
## locale:
## [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252
## [3] LC_MONETARY=French_France.1252 LC_NUMERIC=C
## [5] LC_TIME=French_France.1252
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] rfishbase_3.0.4 plotly_4.9.2.1 readxl_1.3.1
## [4] formattable_0.2.0.1 kableExtra_1.1.0 forcats_0.5.0
## [7] stringr_1.4.0 dplyr_1.0.0 purrr_0.3.4
## [10] readr_1.3.1 tidyr_1.1.0 tibble_3.0.1
## [13] ggplot2_3.3.2 tidyverse_1.3.0 extrafont_0.17
##
## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.4.6 lubridate_1.7.9 lattice_0.20-41 assertthat_0.2.1
## [5] digest_0.6.25 R6_2.4.1 cellranger_1.1.0 backports_1.1.7
## [9] reprex_0.3.0 evaluate_0.14 highr_0.8 httr_1.4.1
## [13] pillar_1.4.4 rlang_0.4.6 curl_4.3 lazyeval_0.2.2
## [17] data.table_1.12.8 rstudioapi_0.11 extrafontdb_1.0 blob_1.2.1
## [21] rmarkdown_2.3 labeling_0.3 webshot_0.5.2 htmlwidgets_1.5.1
## [25] munsell_0.5.0 broom_0.5.6 compiler_4.0.1 modelr_0.1.8
## [29] xfun_0.14 pkgconfig_2.0.3 htmltools_0.5.0 tidyselect_1.1.0
## [33] fansi_0.4.1 viridisLite_0.3.0 crayon_1.3.4 dbplyr_1.4.4
## [37] withr_2.2.0 grid_4.0.1 nlme_3.1-148 jsonlite_1.6.1
## [41] Rttf2pt1_1.3.8 gtable_0.3.0 lifecycle_0.2.0 DBI_1.1.0
## [45] magrittr_1.5 scales_1.1.1 cli_2.0.2 stringi_1.4.6
## [49] farver_2.0.3 fs_1.4.1 xml2_1.3.2 ellipsis_0.3.1
## [53] generics_0.0.2 vctrs_0.3.1 gh_1.1.0 tools_4.0.1
## [57] glue_1.4.1 crosstalk_1.1.0.1 hms_0.5.3 yaml_2.2.1
## [61] colorspace_1.4-1 rvest_0.3.6 memoise_1.1.0 knitr_1.28
## [65] haven_2.3.1
Jeremy WICQUART | jeremywicquart@gmail.com | 2020-08-23 21:42:23